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DREEM Relates Every Entities' Motion

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Global Tracking Transformers for biological multi-object tracking.

Installation

Development

Clone the repository:

git clone https://github.com/talmolab/dreem && cd dreem

Set up in a new conda environment:

Linux/Windows:
GPU-accelerated (requires CUDA/nvidia gpu)
conda env create -y -f environment.yml && conda activate dreem
CPU:
conda env create -y -f environment_cpu.yml && conda activate dreem

OSX (M chip)

conda env create -y -f environment_osx-arm.yml && conda activate dreem

Uninstalling

conda env remove -n dreem